Harvey Lab
Avian Disease Ecology


We are the avian disease ecology group at the University of Rhode Island.
We work at the intersection of disease ecology and evolution, conservation,
and transcriptomics to understand the impacts of anthropogenic change, conservation of declining birds,
and how species adapt to these stressors.

Johanna A. Harvey, PhD

Johanna A. Harvey, PhD

Postdoctoral Researcher

Joint position at the University of Maryland & USGS Eastern Ecological Science Center

Research

My research broadly seeks to understand the role of anthropogenic factors, such as global climate change and urbanization, on the ecology and evolution of avian disease and the impacts on wild bird populations. Currently, I am a Postdoctoral Researcher with a joint appointment at the Joint position at the University of Maryland & the USGS Eastern Ecological Science Center working with Drs. Jennifer Mullinax and Diann Prosser. Here my research expands the scope of my avian disease by addressing the current incursion of high pathogenicity avian influenza into North America. This introduction has resulted in an unprecedented and widespread epizootic event heavily impacting poultry and free-living wild birds in the spring and summer of 2022. Recent evolutionary clades of avian influenza have resulted in severe disease in previously asymptomatic wild birds along with an increased geographical spread. My research seeks to identify the changing dynamics of high pathogenicity avian influenza and use decision analysis and modeling to determine effective management options for moving forward and identifying effective and actionable avian disease management options. The collaborative aspects of this emerging disease research allow me to work with wildlife managers, decision scientists, and implement actionable science focused research.

I received my Ph.D. at the Texas A&M University working on avian malaria diversification in the lab of Dr. Gary Voelker. My first postdoctoral position was in Dr. Sarah Knutie’s lab looking at the affects of urbanization and an invasive parasite, Philornis downsi, on Darwin’s finches in the the Galapagos Islands. This was followed by my time as a Gerstner Scholar at the American Museum of Natural History where I began to expolore the role of climate change in range expansions and increasing impacts of avian malaria across latitudes.

I consider myself fortunate to have found science and research. As a young adult I was provided with opportunities to interact with researchers and mentors that exposed a world and opportunities that I didn’t even know existed when I was growing up. I seek to provide these opportunities and an inclusive environment in order open this world up to others and work towards improving diversity in EEB.

I spend my free time with my husband and cat, and I enjoy reading fantasy, hiking, gardening, textile crafts and swimming.

Download my CV.

Interests
  • Disease ecology
  • Anthropogenic stressors
  • Immunogenetics
  • Decsion Science
Education
  • PhD in Wildlife and Fisheries Sciences, 2018

    Texas A&M University

  • BSc in Wildlife and Fisheries Sciences, 2010

    Texas A&M University

Experience

 
 
 
 
 
Incoming Assistant Professor
University of Rhode Island
Jan 2025 – Present Kingston, RI

Research focus:

  • Wildlife Disease Ecology
  • Avian influenza research focusing on wild bird population impacts and immune adaption across host species
 
 
 
 
 
Postdoctoral Researcher
Joint position at University of Maryland & the USGS Eastern Ecological Center within the Disease Decision and Analysis Research (DDAR) group
Apr 2022 – Dec 2024 Maryland

Research focus:

  • Adressing the state of the current highly pathogenic avian influenza virus (Eurasian origin H5N1 of clade 2.3.4.4b) introduction into North America impacting wild birds and poultry.
  • Applying decision analysis and modeling of high pathogenicity avian influenza in North America to aid in disease management.
 
 
 
 
 
Gerstner Scholar
Sep 2019 – Mar 2022 New York
Determine how birds are responding to pathogens across northern latitudes, considering shifts in vectors and pathogens due to human induced climate change.
 
 
 
 
 
Postdoctoral Research Associate
Jan 2018 – Jun 2019 Connecticut
Examined the effects of urbanization and parasitism by an ectoparasite on Darwin’s finches in the Galápagos.

Research overview

My research program uses an integrative framework of disease evolutionary ecology and host immunology to examine the affect of emerging avian pathogens and parasites on hosts. I leverage research to address conservation needs using decision science through collaborative efforts with agency, managers, and stakeholder partners to mitigate drivers of avian decline.

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Anthropogenic impacts
My research characterizes the evolutionary host response to malaria parasite infections across a latitudinal gradient in wild birds. Sampling focuses on resident, short, and medium distant migrants in order to capture infections which are a result of climate-change-induced-range shifts of parasites.
Host immune response
Birds with variable innate immune response may exhibit some tolerance and or resistance to related infections or no innate immunity due to low or no previous exposure.
Host-vector-pathogen dynamics
My research characterizes the evolutionary host response to malaria parasite infections across a latitudinal gradient in wild birds. Sampling focuses on resident, short, and medium distant migrants in order to capture infections which are a result of climate-change-induced-range shifts of parasites.

Current Research

My current research examines the novel and high pathogenicity avian influenza virus (HPAIV) H5N1 that emerged in North America beginning in late 2021 through both a trans-Atlantic and Northern Pacific migratory introductions. This has resulted in an unprecedented and widespread epizootic event heavily affecting poultry and free-living wild birds, increasingly mammals, inlcuding dairy cattle and humans. The higher transmission and susceptibility among wild bird hosts are expected to increase the number of wildlife reservoirs for the virus, facilitating the continued spread and virus evolution. This ongoing impact threatens to change disease dynamics and expand this One Health issue. Recent work has examined shifts in geographical expansion, host breadth, and temporal expansion of transmission periods. Ongoing research tries to characterize host repsonses across wild birds and examine species vulnerability but also host roles that inform disease dynamics such as transmission and dispersal.

Recent Publications

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(2023). Effect of urbanization and parasitism on the gut microbiota of Darwin’s finch nestlings. Molecular Ecology.

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(2023). The Changing Dynamics of Highly Pathogenic Avian Influenza H5N1: Next Steps for Science and Management in North America. Biological Conservation.

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(2021). Urban living influences the nesting success of Darwin’s finches in the Galápagos Islands. Ecology and Evolution.

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(2020). Effect of introduced parasites on the survival and microbiota of nestling cactus finches (Geospiza scandens) in the Galápagos Islands. Journal of Ornithology.

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(2019). Host associations and climate influence avian haemosporidian distributions in Benin. International journal for parasitology.

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(2019). Phylogenetic structure of Holbrookia lacerata (Cope 1880)(Squamata: Phrynosomatidae): one species or two. Zootaxa.

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(2018). The systematics and biogeography of the Bearded Greenbuls (Aves: Criniger) reveals the impact of Plio-Pleistocene forest fragmentation on Afro-tropical avian diversity. Zoological Journal of the Linnean Society.

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(2017). Avian haemosporidian detection across source materials: prevalence and genetic diversity. Parasitology research.

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(2017). Diversity and distribution of avian haemosporidians in sub-Saharan Africa: an inter-regional biogeographic overview. Parasitology.

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(2017). So similar and yet so different: taxonomic status of Pallid Swift Apus pallidus and Common Swift Apus apus. Bird Study.

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(2015). Genetic structure is inconsistent with subspecies designations in the western massasauga Sistrurus tergeminus. Journal of Fish and Wildlife Management.

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(2014). Does the niche breadth or trade-off hypothesis explain the abundance--occupancy relationship in avian Haemosporidia?. Molecular ecology.

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(2013). Food Habits of Ocelots and Potential for Competition With Bobcats In Southern Texas. The Southwestern Naturalist.

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